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Month: August 2024

Defra outlines a refreshed bovine TB control badger strategy.

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Defra has today (30th August 2024) announced plans for a refreshed bovine TB control badger strategy. Whilst it is good to see a clearly stated intention to stop culling badgers, that this will not happen before the end of the current parliament (2029) is completely unacceptable. These plans propose five more years of badger culling, all without sound scientific basis, and would result in the total number of culled badgers exceeding 300,000, all with no measurable disease benefit.

It is equally disappointing to see proposals for mass badger vaccination to be employed as a tool against bovine TB in cattle. This is an unwelcome, and scientifically unjustified continuation of the badger blame game. The scientific evidence just does not support the continued focus on badgers as a significant source of bovine TB in cattle, despite ill-informed media reports in recent weeks. It is a complete waste of resources when the real need is to retrain vets on the science of bovine TB and wildlife, over which they have been misled for many years, and to change cattle testing policy.

While we welcome the statement that “The full strategy will be co-designed with farmers, vets, scientists and conservationists”, we are somewhat sceptical about how inclusive this will be. There has been no engagement with scientists involved in important peer-reviewed science (here and here), despite frequent requests for meetings or at least dialogue. Will there be continued resistance to accept published science that challenges the views of those civil servants at Defra who have been pushing un-evidenced, expensive and unethical policy for so long?  An uncomfortable history of bad decision making by those who need to stand aside to allow genuine progress.  

Not mentioned in the statement, is the 22nd August consultation on licensing of a new badger cull  in the Low Risk Area (LRA). It looks likely that Labour are not just re-authorising existing licences, they are planning to start new licences in new areas, this one in Cumbria in the Eden valley north and east of Penrith. This will have a 100% cull objective, repeating the failed epi-cull of the immediately adjoining area, the subject of a report last year (see here).  There are rumours that two further LRA culls may be licenced this autumn or next, possibly in Lincolnshire and Hertfordshire / Bucks and who knows where else?  

Here is the Defra announcement in full:

 

Government to end badger cull with new TB eradication strategy  

  • First Bovine TB strategy in a decade to end badger cull and drive down TB rates to protect farmers livelihoods
  • New holistic approach will ramp up cattle control measures, wildlife monitoring and badger vaccinations
  • Proposals co-designed alongside farmers, vets, scientists, and conservationists to beat TB that devastates livestock farmers and wildlife

Work on a comprehensive new TB eradication strategy has been launched today (30 August) to end the badger cull and drive down Bovine Tuberculosis (TB) rates to save cattle and farmers’ livelihoods.   

Over the past decade, TB has had a devastating impact on threatened British livestock and wildlife. Over 278,000 cattle have been compulsorily slaughtered and over 230,000 badgers have been killed in efforts to control the disease, costing taxpayers more than £100 million every year. 

For the first time in over a decade, the Government will introduce a new bovine TB eradication strategy working with farmers, vets, scientists and conservationists to rapidly strengthen and deploy a range of disease control measures.   

The new strategy will mark a significant step-change in approach to tackle this devastating disease, driving down TB rates and saving farmer livelihoods and businesses. It will use a data-led and scientific approach to end the badger cull by the end of this parliament.   

The work to end the badger cull starts immediately and includes:     

  • First badger population survey in over a decade: The last major badger survey was carried out between 2011-13, leaving policy makers with no clear idea of the impact culling techniques have on our badger populations. The Government will work at pace to launch a new survey this winter to estimate badger abundance and population recovery to illustrate the impact of widespread culling over the past decade.  
  • New national wildlife surveillance programme: After a decade of culling, the prevalence of TB in remaining badger populations is largely unknown. The development of a new national wildlife surveillance programme will provide an up-to-date understanding of disease in badgers and other wildlife such as deer. Together with updated estimates of badger abundance, this will unlock a data-driven approach to inform how and where TB vaccines and other eradication measures are rapidly deployed to drive down TB rates and protect farmers’ livelihoods.   
  • Establish a new Badger Vaccinator Field Force: Badger vaccinations create progressively healthier badger populations that are less susceptible to catching and transmitting TB. A new Badger Vaccinator Field Force will increase badger vaccination at pace to drive down TB rates and protect badgers.   
  • Badger vaccination study: To supplement the Field Force, the Government will rapidly analyse the effect of badger vaccination on the incidence of TB in cattle to encourage farmers to take part and provide greater confidence that doing so will have a positive effect on their cattle.  

In addition, we will accelerate work on the development of a cattle vaccine, whichis at the forefront of innovative solutions to help eradicate this disease. The next stage of field trials will commence in the coming months. Our aim is to deliver an effective cattle TB vaccination strategy within the next few years to accelerate progress towards achieving officially TB free (OTF) status for England.   

The full strategy will be co-designed with farmers, vets, scientists and conservationists. It will consider a range of further measures including boosting cattle testing, reducing the spread of disease through cattle movements, and deploying badger vaccination on a wider, landscape scale. This will build on Professor Sir Charles Godfray’s 2018 independent strategy review.  

Minister for Food Security and Rural Affairs, Daniel Zeichner said:   

“Bovine tuberculosis has devastated British farmers and wildlife for far too long.  

“It has placed dreadful hardship and stress on farmers who continue to suffer the loss of valued herds and has taken a terrible toll on our badger populations.   

“No more. Our comprehensive TB eradication package will allow us to end the badger cull by the end of this parliament and stop the spread of this horrific disease.”   

Chief Veterinary Officer Christine Middlemiss said:   

“Bovine tuberculosis is one of the most difficult and prolonged animal disease challenges we face, causing devastation for farming communities.   

“There is no single way to combat it, and a refreshed strategy will continue to be led by the very best scientific and epidemiological evidence. With the disease on a downward trajectory, we are at a crucial point. Working in collaboration with government and stakeholders will be the only way we achieve our target to eradicate bovine tuberculosis in England by 2038.”  

John Cross, chair of the bTB Partnership said:   

“As chair of the bTB Partnership for England, I am delighted to hear Minister Zeichner’s intention to refresh the current bTB strategy. Ten years after its launch, the time is right to look again at the tools we use to tackle this persistent disease.  

“Bovine TB is the common enemy, not farmers or wildlife groups. Only by working together, will we reach our goal.”   

 The government will also publish additional information about animal and herd-level bTB risk – for example, the date and type of the most recent TB test completed in the herd of origin of that animal and how long the animal has been in the herd.  

This greater level of detail will be made available on ibTB – a free to access interactive map set up to help cattle farmers and their vets understand the level of bovine TB in their area and manage the risks when purchasing cattle.  

Today’s announcement ensures the government meets its manifesto commitment and represents a new direction in defeating this disease that will both protect the farming community and preserve wildlife.    

Notes to editors:  

Existing cull processes will be honoured to ensure clarity for farmers involved in these culls whilst new measures can be rolled out and take effect.    

The Bovine TB Partnership is a stakeholder-government collaboration established as a driving force for further progress towards disease eradication.  It is made up of experts from government (Defra, APHA and Natural England), as well as farmers, veterinarians, scientists, academics, and ecologists/conservationists, including representatives from the National Farmers Union, British Veterinary Association, British Cattle Veterinary Association, and the National Trust.

Department for Environment, Food and Rural Affairs (Defra) This email and any attachments is intended for the named recipient only. If you have received it in error you have no authority to use, disclose, store or copy any of its contents and you should destroy it and inform the sender. Whilst this email and associated attachments will have been checked for known viruses whilst within Defra systems we can accept no responsibility once it has left our systems. Communications on Defra’s computer systems may be monitored and/or recorded to secure the effective operation of the system and for other lawful purposes.

 

Chief Vet’s targeted badger cull plans finally scrapped

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The ‘targeted’ badger culling proposals of the last Government are rejected by the new Labour Government but the ‘ineffective’ badger culls still continue, pending a further Review.

Lawyers acting for Secretary of State for Secretary of State for Environment, Food and Rural Affairs (DEFRA)  Steve Reed, have responded to ecologist Tom Langton’s Judicial Review Application [AC-2024-LON-002292] against a ‘future of badger culling’ Consultation (here) prepared by the previous administration. Specifically, the March 14th Consultation had proposed a new wave of ‘targeted‘ badger culling across England, killing many thousands of badgers each year, potentially until 2038.

The controversial proposals were promoted by the Chief Veterinary Officer Christine Middlemiss’s disputed beliefs that badgers play a central role in the spread of cattle TB, the science of which Langton, with other veterinary experts has challenged in recent years (here).

Defra have confirmed their decision not to proceed with proposals to introduce and license targeted culling across England. Defra had received multiple objections to the Consultation as well as support for proposals to better identify cattle disease risks that will still go forwards. The response indicates that the Secretary of State will instigate a fresh review of future bovine TB policy.

The welcome news signals a shift from previous policy but is bitter-sweet, with the news that a new badger cull area is being planned: Cumbria’s Eden valley South of Carlisle and to the east of Penrith under a Low Risk Area  (LRA) policy licence. Communications have been sent to Tony Juniper at Natural England objecting to the consideration of any new LRA licence, on scientific grounds, but so far there has been no substantive response, with a failure to curtail culling licences that are ongoing from before the general election.  It is expected that Natural England will reauthorize licences for over 20 intensive culling areas agreed under previous policy arrangements that many think should also be cancelled. These are in addition to those completing supplementary culls, meaning up to 20,000 badgers will be shot at night over the next twelve weeks with a percentage dying slowly from shot wounds in ways found cruel by a government appointed expert group in 2014.

Concerns remain that despite withdrawing the cull consultation proposals, the Defra’s response leaves some important question unanswered. This includes speculation in a heavily disputed recent Animal and Plant Health Agency report. Further, the Defra response to the economic aspects of culling states that the costs of badger culling may not outweigh the economic benefits, a point of interest in the Government spending rounds in the coming months.

Tom Langton said:

“This is a small but important step towards bringing forwards the abolition of badger culling forever.  Labour has previously stated that culling is ineffective and now the Government has scrapped a Consultation that claimed culling worked. But it is shameful that the Labour administration is continuing the badger culls and expanding them in the Low Risk Area, contradicting its manifesto pledge, to appease a vocal minority based upon old scientific rhetoric and dogma.

Bovine tuberculosis is a disease of mammals needing expert measures that have been neglected for reasons demonstrated in the recent BBC documentary LINK charting the work of Brian May and the Save Me Trust with farms in England and Wales.

Badger culling must stop, but most of all a new testing regime for cattle is needed to give farmers the powers to use the right tests at the right time to beat TB in the herd where a hidden reservoir remains. Something that red tape presently prevents and at massive unnecessary cost to the taxpayer. It could be resolved in an afternoon with the right people around the table. I urge Defra to listen to us as they have promised and to meet with my team to help formulate new policy.”

Langton added;

Meanwhile, I would also very much like to thanks my legal team: Lisa Foster and Hannah Norman at Richard Buxton and Richard Turney and Ben Fullbrook at Landmark Chambers and with Dominic Woodfield from Bioscan as expert witness on the ecological impacts issues. And last but not least all of the Badger Trusts, Groups, Charities  and generous individuals around Europe who have combined to form the Badger Crowd. With the specific aim of creating a voice for and to bring justice to the fight for truth surrounding badger culling. With a key role played in recent months by Protect the Wild, promoting awareness and fundraising.”

Further information

Defra’s decision was made on 23rd August, the date the BBC documentary of Brian May’s research was first screened (watch here), showing the inadequacies of the current cattle testing system.

The Defra response does not address the ecological impacts issues correctly and does not even seem to understand the challenge relating to protected species away from designated nature areas. Dominic Woodfield comments:

“Defra’s acknowledgement that the scientific, ethical and economic justifications for the extirpation of tens of thousands of badgers annually since 2013 have collapsed, is welcome but long overdue. It is tragic that it has needed the pressure of repeat litigation by Tom and others, the publication of competing science exposing the fallacy of blaming and slaughtering wildlife for a disease rooted in poor livestock management practices and failures of animal husbandry, and a change of the party in Government for them to finally concede the point.

Even now, Defra continue to disregard the wider ecosystem level effects of removing an apex predator from wide swathes of England – we may never now know what impacts this has had (and continues to have) on our native wildlife and declining species. Tom’s and others’ persistence in the face of obduracy, reliance on poor science and the making of decisions based on the political clout of those lobbying for the status quo, is extraordinary and commendable, but it is also fuelled by the long-held conviction that they were fundamentally right. There are a very small and diminishing number of hiding places left for those who’ve pinned their reputations and careers on badger culling as being a rational or effective answer to the bovine TB problem.

 

More or less? Truth, life and 56%

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August 2024

In life generally people crave the truth, learn from the truth and act on the truth. Truth is the universal source for learning, where trust develops, and where solutions to tackle the myriad of challenges that life throws at us are fostered.

Yet, we all know that absolute truth is a fickle thing. As time passes, new insights evolve, things change. Gradually we may find that what we thought we knew is conditional on certain things, right only some of the time, or even wrong for a clever reason.

So care is needed, especially with the big decisions where large amounts of money, time and effort are employed to address a particular issue or problem.

Take for example the culling of badgers. A Government expert [1] concluded 20 odd years ago that a very small trial study [2] suggested badgers might spread bTB to cattle, especially if frightened away from the setts where they live, and shooting them would help.

Sounds ridiculous? The entire livestock industry eradication policy in GB and Ireland has been based around ‘badger blame’ for the spread of Bovine tuberculosis among cattle herds for two decades. There has been over £2 Billion of subsequent spending and hundreds of thousands of badgers have been culled around a truth that is now uncomfortable to lose, because so many people have enthusiastically believed and embraced it. They own it, and accepting it is wrong messes badly with what they have said and done over the last 20 years.

The matter came into sharp focus in March of 2024, just weeks before the general election was called, with a Government Agency staff academic paper on badger culling effort [3] in England since 2013. This, followed shortly by a DEFRA Public Consultation [4] aimed at extending badger culling for a decade or more, over further huge areas, but with even fewer constraints on when, where and how.

To the general public this is all a mystery. Surveys show that the public largely think that badger culling ended in 2020 when Government said it was ‘phasing it out’, and the new government’s election manifesto view [5] that it has been ‘ineffective’ means it will stop for good. But actually, in the cold night air, from Cornwall to Cumbria, guns with silencers are steadily slaughtering tens of thousands of badgers each autumn. As harvest 2024 is concluding, the culling is now ramping up yet again.

So what about the truth? Well Steve Barclay MP, the old Defra Minister, one of the few seniors to keep his seat during the Labour landslide, had claimed in an ebullient foreword to the March consultation, that a 56% benefit has been gained after four years of culling badgers down to under 30% of their numbers.

So let’s unpack the truth in that. Firstly, the key time marker in all this is 2016 when the first of ten large cull areas were all up and running and followed by around 60 more at a starting rate of around ten a year. Unfortunately for unpicking science and truth, this was also the time that more intensive cattle testing began ramping up. So telling between the effect of culling and testing is not possible, despite what Barclay claimed.

‘Ah’, say the boffins at the Government Agency for badger culling. ‘But without killing badgers, the cattle tests wouldn’t work so well.’

At this point most people switch off….’ I dunno…suppose it’s possible…I’m not that interested  actually….’ It’s one of those speculation moments that is only so interesting given that the facts and alternatives are beyond the non-specialist’s reach and require weeks of fact-checking. This is indeed a complex issue, even for interested parties to consider.

So where did Barclay’s view come from? Well, back in 2012 the coalition government encouraged an academic paper in 2013 [6] that was timed to support badger culling, and that printed its truth, as a part of the justification for mass badger  culling. The paper said a few things that we now know were right and wrong thanks to good old Captain Hindsight.

Right, was that the old small study had been rendered meaningless by a horrendous Foot and Mouth disease outbreak in 2001 [7] that mucked up the experiment’s need for ‘stable countryside’ to be able to monitor change in three of the ten areas – enough to spoil the results. The hapless NFU encouraged rapid restocking with untested TB infected cattle, firing up the bTB epidemic.

Wrong were the calculations that rested upon a belief that cattle do not give bTB to badgers. It was thought to be TB moving all one-way, from badger to cattle, that Defra believed in those days, something that was always suspicious and that modern studies now show is wrong [8-11].

And questionable too was a theory, to try to make the numbers add up in a way no one has ever explained and that looks implausible. That theoretical infections going from badger to cattle are somehow passed on more rapidly than those originating from cattle. Baffling?

Lost already? Well to make the old small study work, the boffins believed that while around 94% of disease was the result of cattle-cattle infection, around 6% was down to badgers. Unfortunately, wildlife groups have believed and utilized these figures, despite warnings, not realising it is part of a dubious study that blames badgers and the king pin in justifying the badger culls since 2013. The so called ‘onward transfer’ of infection from badger to cattle is akin to a biblical myth with no scientific legs, yet it became the truth that key people in Government believed. It was held up as the science to believe in, forming and promoting the badger cull policy. Most cull objectors had realised this by 2016.

Back to Barclay’s 56% and the boffins new paper in March 2024. Despite elaborate graphics, this was a pretty rough-and-ready analysis, looking at before and after culling and substantial cattle testing improvements in the first few years of application, and attributing the decline in herd TB breakdowns to a combination of badger culling and herd testing. It stated (twice) that it is not possible to say which factor caused the change. Yet in a discussion of the results it also said the results were consistent with effects of badger culling seen during the small study, and studies using the small studies assumptions, and this speculation found itself in the paper summary (abstract) at the front.  This now gives an opportunity for apparent disease benefit to masquerade as fact or truth. Hence Barclay and the National Farmers Union ramped up the rhetoric on ‘Badger Culling Works’, and quoted the 56% benefit as a function of badger culling. Not bTB control – the better description of the mix of things being tried. Without evidence. Sunak picked up the mantle and did the same in a shed with farmers shortly before he lost office at the general election.

But the truth, as pointed out by other senior academics observing, is that these public statements were untruthful. Change might or might not have been assisted by badger culling – the very question the small RBCT study 20 odd years ago was supposed to resolve when it came up with a split answer – it possibly does and it possibly doesn’t. Flip a coin. And the real truth is that badger culling could be having some effect or it might all be down to tougher testing and movement control. Saying badger culling helped from 2013 or was pivotal or a catalyst is a bit like any of the innumerable causation arguments that created problems in science before they were recognized for what they were during the 1960’s [12].  Association is not the same as causation. Would anyone propose that Donald Trump being elected as President in 2016 caused bovine TB to start to fall? Well it happened at the same time, and bTB has come down since………..Or was the fall in TB the result of a general switch to tougher testing?

The problem for truth in this case is that Governments need to make decisions, and where there is uncertainty they need to have a plan. But Government scientists presenting their opinions as fact, for politicians and stakeholders to believe and to repeat, is a deception. A dangerous step and something that needs weeding out by journals employing peer-reviewers. And hopefully not by mournful inquiries years later, charged with working out how it all went wrong. The problem here is that there are few people experienced enough to understand and judge boffin science, and so you find your mate reviewing your work, and you review your mates work, and bad habits develop. Bovine TB science is plentiful and this syndrome sees awkward material published quite often; it provides a good exemplar of the issue called the reproducibility crisis [13]. All the Government scientists need to say is we ‘think’ it might be working because…. that is a long way from saying it ‘is’ – think snake oil salesman. It matters, it matters a lot when lots of lives and money are at stake. It matters because lying to the public is undemocratic and wrong.

So if someone asks you about badger culling, you might just say – ‘well its complicated and I don’t know.‘ But if they pick up a gun to shoot a badger, you might just say ‘hang on – I think you might be breaking the law’. Which requires evidence, and sufficient clarity that mass killing badgers to prevent the spread of bovine TB can be justified. And after 20 years there is no truth to suggest it does, only guesswork. However, cattle testing and movement control has worked in England and Wales without badger culling, so using that proven remedy is justified with some confidence and is an honest approach, if truth be told.

References

1. King, D. 2007 Bovine tuberculosis in cattle and badgers. A report by the Chief Scientific Advisor, Sir David King, to the Secretary of State for Defra on 30 July  2007. 

2. Donnelly, C. A. et al. Positive and negative effects of widespread badger culling on tuberculosis in cattle. Nature 439, 843–846 (2006).

3. Birch, C. P. D. et al. Difference in differences analysis evaluates the effects of the badger control policy on bovine tuberculosis in England. Sci Rep 14, 4849. https://doi.org/10.1038/s41598-024-54062-4 (2024).

4. DEFRA 2024 Bovine TB: Consultation on proposals to evolve badger control policy and introduce additional cattle measures. A consultation exercise contributing to the delivery of the government’s strategy for achieving bovine tuberculosis free status in England..

5. Labour Party manifesto https://labour.org.uk/change/        

6. Donnelly, C. A. & Nouvellet, P. The contribution of badgers to confirmed tuberculosis in cattle in high-incidence areas in England. PLoS Curr. 10, 5 (2013).

7. Private Eye 2001 Special Report. Not The Foot And Mouth Report. London

8. Biek R, O’Hare A, Wright D, Mallon T, McCormick C, Orton RJ, McDowell S, Trewby H, Skuce RA, Kao RR. Whole genome sequencing reveals local transmission patterns of Mycobacterium bovis in sympatric cattle and badger populations. PLoS Pathog. 2012;8(11):e1003008. doi: 10.1371/journal.ppat.1003008. Epub 2012 Nov 29. PMID: 23209404; PMCID: PMC3510252.

9. Crispell J, Benton CH, Balaz D, De Maio N, Ahkmetova A, Allen A, et al. Combining genomics and epidemiology to analyse bi-directional transmission of Mycobacterium bovis in a multi-host system. Elife. 2019;8

10. Akhmetova, A; Guerrero, J; McAdam, P; Salvador, LC; Crispell, J; Lavery, J; Presho, E; Kao, RR; Biek, R; Menzies, F et al. 2021. Genomic epidemiology of Mycobacterium bovis infection in sympatric badger and cattle populations in Northern Ireland. bioRxiv 2021.03.12.435101; doi: https://doi. org/10.1101/2021.03.12.435101

11. van Tonder AJ, Thornton MJ, Conlan AJK, Jolley KA, Goolding L, Mitchell AP, Dale J, Palkopoulou E, Hogarth PJ, Hewinson RG, Wood JLN, Parkhill J. Inferring Mycobacterium bovis transmission between cattle and badgers using isolates from the Randomised Badger Culling Trial. PLoS Pathog. 2021 Nov 29;17(11):e1010075. doi: 10.1371/journal.ppat.1010075. PMID: 34843579; PMCID: PMC8659364.

12. Hill, Austin Bradford. “The Environment and Disease: Association or Causation?.” Proceedings of the Royal Society of Medicine 58 (1965): 295.

13. Baker, Monya, 2016, “1,500 Scientists Lift the Lid on Reproducibility”, Nature, 533(7604): 452–454. doi:10.1038/533452a

 

 

Brian May – The Badgers, the Farmers, and Me

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Brian May: The Badgers, the Farmers, and Me’ is a documentary that was aired on BBC2 at 9.00pm on Friday 23 August, and is now available on the BBC iplayer. Filmed over 4 years, the programme charts Brian May’s journey as he explores the ongoing battle against bovine tuberculosis, and the differing views of both farmers and those who oppose badger culling .

The new film covers 12 years of practical research ongoing over the last 12 years. The shocking truth around the monumental failure of Defra to effectively address the problem of bovine TB  is highlighted, and the resulting tragic slaughter of both cows and badgers is revealed with horrible clarity.

Animal campaigner Brian May and Anne Brummer, CEO of May’s Save-Me organization, have spent the years since culling was first mooted by David Cameron’s government uncovering the truth about bovine TB. Rather than fighting the farmers, May and Brummer have looked at the problem from the viewpoint of the farmer and the vet , following a case study which has transformed a chronically infected cattle herd into a healthy herd with TB-free status. This was achieved without killing a single badger. The revolutionary methods used are now known as the Gatcombe strategy.

Meanwhile, over the same period, nearly a quarter of a million badgers have been killed on the basis that they spread bTB to cattle. This new documentary shows that the badger cull policy implemented since 2013 has failed farmers completely. Rates of bTB infection and consequent numbers of cattle slaughtered are in some areas no better, and in others worse than ever, following the cull. The work from the case study farm in the documentary clearly shows with that blaming badgers has been a wildly incorrect reading of the facts.

May and Brummer conclude that the very idea that badgers are part of the bTB re-infection process is unsupportable. Government and NFU policy has been based on the work of a small number of scientists who have persisted in claiming disease benefit  from  statistical models, ignoring the uncertainty around them, and doubling-down when challenged.

This new documentary is the first time that an alternative view about badger culling has been presented in documentary format. Do watch it for a sincere, refreshing and honest take on badger culling. It goes to the heart of the problem, and shows compassion for the farmers, the cattle and badgers. And it provides answers and a way forward. Congratulations to all involved. 

Available on YouTube here.

 

RBCT uncertainties debate gains momentum

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On December 13th 2022, a preprint was put up on the ResearchSquare platform. Entitled ‘Absence of effects of widespread badger culling on tuberculosis in cattle’ [1], it was a reanalysis of the Randomized Badger Culling Trials (RBCT). Following a protracted period of review, with a number of very long silences, and relatively few revisions, it was published in Nature Scientific Reports on July 15th 2024 (Torgerson et al 2024) [2]. Finding a major anomaly, it uses a range of statistical models to re-examine the RBCT data  and concludes that most standard analytical options did not show any evidence to support an effect of badger culling on bovine TB in cattle.

Torgerson et al 2024 [2] noted that the statistical model selected for use in the original study in 2006 [5] was one of the few models that did show an effect from badger culling. However, various model assessment criteria suggest that the original model was not an optimal model compared to other options available. You can read a short blog on the new Torgerson et al paper here, and the full paper is available here. Essentially, the more appropriate models in the latest study strongly suggest that badger culling does not bring about the disease reduction reported.

Following publication, the new analysis [2] was mentioned in an article in Vet Times on July 24th, and in Vet Record in their 3/10 August edition. Neither publication noted its major significance. No other mainstream media reported on it at all. This is perhaps surprising since the government badger cull policy rests all but entirely on the conclusions from the RBCT. It is the science that DEFRA has used in court to defend their decisions to experiment with culling. It is the science that has resulted in 11 (12 including 2024) years of intensive and supplementary badger culling across huge areas of England, and around 230,000 dead badgers. In other words it is the pivotal piece of work for the decision-making around badger culling policy.

The reluctance of the media to report further on Torgerson et al. is a prelude to work by two of the authors of the original 2006 analysis (Christl Donnelly and Rosie Woodroffe) together with a DPhil Statistics student at Oxford University (Cathal Mills), who had, at the time of publication, two rebuttal papers in press with Royal Society Open Science [3,4]. Unusually, the abstracts and supplementary information for these new papers were posted online and available to view before publication without the main text. Enquiries regarding the posted information and the main papers resulted in in press versions being helpfully forwarded. The new analyses from Mills et al. are entitled An extensive re-evaluation of evidence and  analyses of the Randomised Badger Culling Trial (RBCT) I: Within proactive culling areas [3], and  An extensive re-evaluation of evidence and analyses of the Randomised Badger Culling Trial II: In neighbouring areas [4].

Published on August 21st, the two new papers largely duplicate the analyses in Torgerson et al 2024, but use different model assessment criterion to come to a different conclusion. In fact they double-down on the conclusions of the original 2006 analysis: “…we estimate substantial beneficial effects of proactive culling within culling areas, consistent with separate, existing, peer-reviewed analyses of the RBCT data.”

So in the year and a half since the posting of the Torgerson pre-print [1], Mills, Woodroffe and Donnelly have been working on their rebuttal to it. Torgerson and his team have looked through the in press versions of the Mills et al (2024) publications [3,4] for a few days and multiple problems stand out. In particular:

  1. Incorrect statements regarding disease control outcomes since 2010
  2. Use of a non-peer reviewed publication
  3. Confusion between the offset and overdispersion leading to incorrect calculation of disease exposure
  4. Incorrect and confused statements regarding model comparisons
  5. Exaggerated claims during use of new modelling.
  6. Failure to address the modern interpretation of SICCT test reactors
  7. Failure to recognise the onward effect of the analytical failure on multiple subsequent publications and policy outcomes.

Somewhat unusually, the new Mills et al papers do not refer to or cite the published Torgerson et al paper [2], only the first pre-printed version of Torgerson et al. from 2022 [1]. So in essence, the new Mills et al papers [3,4] are out of date at the time of publication, failing to refer to the updated 2023 preprint or the final version in  Scientific Reports published 15th July 2024 [2]. Following contact with the Royal Society, a response raising concerns with the newly published papers is being written and will be submitted shortly. An interim report has been put together by Torgerson and Langton with brief observations on the new papers (see here).

The Royal Society says it is committed to reproducibility. Reproducibility is the ability of independent investigators to draw the same conclusions from an experiment by following the documentation shared by the original investigators [6]. The issues identified in [2] and “rebutted” in [3,4] illustrate one of the major issues of the reproducibility crisis: poor statistical inference. It is hoped that the conclusions of this exchange will inform future bovine TB intervention policy this autumn.

References

[1] Torgerson P, Hartnack S, Rasmusen P, Lewis F, Langton T. 2022 Absence of effects of widespread badger culling on tuberculosis in cattle. In Review. (doi:10.21203/rs.3.rs-2362912/v1)

[2] Torgerson, P.R., Hartnack, S., Rasmussen, P. et al. Absence of effects of widespread badger culling on tuberculosis in cattle. Sci Rep 14, 16326 (2024). https://doi.org/10.1038/s41598-024-67160 (available: https://www.nature.com/articles/s41598-024-67160-0)

[3] Mills CL, Woodroffe R, Donnelly CA. 2024,  An extensive re-evaluation of evidence and analyses of the Randomised Badger Culling Trial (RBCT) I: Within proactive culling areas. R. Soc. Open Sci. (doi:10.1098/rsos.240385)

[4] Mills CL, Woodroffe R, Donnelly CA. 2024, An extensive re-evaluation of evidence and analyses of the Randomised Badger Culling Trial II: In neighbouring areas. R. Soc. Open Sci. 11:240386.

[5] Donnelly CA, Woodroffe R, Cox DR, Bourne FJ, Cheeseman CL, Clifton-Hadley RS, Wei G, Gettinby G, Gilks P, Jenkins H, Johnston WT. Positive and negative effects of widespread badger culling on tuberculosis in cattle. Nature. 2006 Feb 16;439(7078):843-6.

[6] Gundersen Odd Erik 2021The fundamental principles of reproducibility. Phil. Trans. R. Soc. A. 37920200210

 

 

Why are we waiting?

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Things are starting to become slightly clearer as we near the point of discovery over the future of badger culling in England and beyond. Consultees to the online Defra Consultation  questionnaire of 14th March were told this Monday (5th August) that an analysis of Consultation responses will be published in the autumn (Sept-Nov?) giving more time for policy development without badger culling. But there is no reason now to delay clarification on the big 56% lie surrounding the ineffective badger culls.



 

Notably, the NFU appeared fully taken in by the spin from the Animal and Plant Health Agency paper by Colin Birch and Defra, that badger culling ‘is working’. Birch et al. follows on from a paper published in Veterinary Record in 2022 that showed quite neatly how recorded bovine TB levels (recorded OTF-W incidence)  peaked after the introduction of annual tuberculin testing in 2010 and began dropping in the High Risk Area from 2013 in some counties and generally by 2015. And, at a steady rate that did not increase once badger culling started (and that was more widespread from 2018), showing no evidence that badger culling had contributed to a slow decline of around 6% per year. 

Steve Barclay, and previous Environment Ministers before him, had made wild claims of a culling benefit of around 50%, based on APHA parroting the claims made since the 1970s that this is the badger contribution to cattle TB. This has always been a poorly evidenced, lame and far-fetched claim, making a mockery of professional epidemiology.

Not to be fooled, Labour are onto the problem and have firmly labelled badger culling as ‘ineffective’ in their manifesto. They have highlighted the need to work with farmers and scientists which is now the helpful – but not very specific – new Defra mantra.

The Birch paper makes it quite clear in two places that the cause of the welcome decline in bTB first identified formally in 2022, cannot be attributed to any particular intervention, be it better testing, different tests and more frequent tests, better biosecurity or badger culling. It is just a crude before-and-after effort with no controls, showing what was already known in a slightly clunky way. This is no help at all, as Professor Macdonald at Oxford pointed out in his November 2023 ‘state of the science’ review. However, the unfortunately misleading abstract for the Birch paper transmutes opinion into ‘fact’, to give the casual  reader a misinformed overview of the findings. How very CVO.

So what are we left with as we approach the time of Labour’s big reveal this month? Firstly, an increased interest in badger vaccination with Defra organising a media spree with its dutiful contractors to suggest a direction of travel that Natural England seem to think is appropriate.

Also, news from Oxford, where a 50,000 signature petition to the School of Biological Science, organised by the Oxfordshire Badger Group calling for increased academic engagement seems to be working. A response to the Torgerson et al. 2024 paper on the choice of models for analysis of the Randomised Badger Culling Trial data, published  recently in Scientific Reports is imminent. The Torgerson paper wallowed rather oddly for 18 months in peer review, emerging little changed, so plenty of time for the RBCT folk to have prepared.

How the 50 something % cull benefit lie has been peddled in recent months and years:

Farmers Weekly: Badger culling policy reduces cattle TB by 56%, study shows 

Farmers Guardian, Farming matters: Lord Robert Douglas-Miller – ‘The science is clear that the tide is turning on bovine TB’ 

Shrewsbury Conservatives, DANIEL KAWCZYNSKI MP MEETS WITH MARK SPENCER, THE MINISTER OF STATE FOR FOOD, FARMING, AND FISHERIES, URGING HIM TO TAKE TOUGHER ACTION TO REDUCE CASES OF BOVINE TUBERCULOSIS:  

Parliamentary Question response from Mark Spencer: To ask the Secretary of State for Environment, Food and Rural Affairs, what assessment her Department has made of the (a) effectiveness of badger culls in tackling bovine TB and (b) reliability of the TB test used to identify cattle for slaughter; and what estimate her Department has made of the (i) annual cost of bovine TB in Shropshire and (ii) level of bovine TB in that county.